͵͵

News

The music of proteins made audible

It's done through a computer program that learns from Chopin
Peng Zhang Yuzong Chen
By Peng Zhang and Yuzong Chen
Nov. 20, 2021

With the right computer program, proteins become pleasant music.

Chopin-445x219.jpg
Training an algorithm to play proteins like Chopin can produce more melodious songs.

There are many surprising analogies between , the basic building blocks of life, and musical notation. These analogies can be used not only to help advance research, but also to make the complexity of proteins accessible to the public.

We’re who believe that hearing the sound of life at the molecular level could help inspire people to learn more about biology and the computational sciences. While creating music based on proteins , different musical styles and composition algorithms had yet to be explored. So we led a team of high school students and other scholars to figure out how to .

The musical analogies of proteins

are structured like folded chains. These chains are composed of small units of 20 possible amino acids, each labeled by a letter of the alphabet.

Protein-structure-445x776.jpg
Aspects of potein structure can be analogous to musical notation.

A protein chain can be represented as a string of these alphabetic letters, very much like a string of music notes in alphabetical notation.

Protein chains can also fold into wavy and curved patterns with ups, downs, turns and loops. Likewise, music consists of sound waves of higher and lower pitches, with changing tempos and repeating motifs.

Protein-to-music algorithms can thus map the structural and physiochemical features of a string of amino acids onto the musical features of a string of notes.

Enhancing the musicality of protein mapping

Protein-to-music mapping can be fine-tuned by basing it on the features of a specific music style. This enhances musicality, or the melodiousness of the song, when converting amino acid properties, such as sequence patterns and variations, into analogous musical properties, like pitch, note lengths and chords.

For our study, we specifically selected 19th-century , which includes composers like Chopin and Schubert, as a guide because it typically spans a wide range of notes with more complex features such as , like playing both white and black keys on a piano in order of pitch, and chords. Music from this period also tends to have lighter and more graceful and emotive melodies. Songs are usually , meaning they follow a central melody with accompaniment. These features allowed us to test out a greater range of notes in our protein-to-music mapping algorithm. In this case, we chose to analyze features of to guide our development of the program.

To test the algorithm, we applied it to 18 proteins that play a key role in various biological functions. Each amino acid in the protein is mapped to a particular note based on how frequently they appear in the protein, and other aspects of their biochemistry correspond with other aspects of the music. A larger-sized amino acid, for instance, would have a shorter note length, and vice versa.

The resulting music is complex, with notable variations in pitch, loudness and rhythm. Because the algorithm was completely based on the amino acid sequence and no two proteins share the same amino acid sequence, each protein will produce a distinct song. This also means that there are variations in musicality across the different pieces, and interesting patterns can emerge.

For example, music generated from the receptor protein that binds to the has some recurring motifs due to the repetition of certain small sequences of amino acids.

OXTR protein music. , 3.28 MB

 

OXTR-890x443.jpg
,
OXTR, or the oxytocin receptor, has repeating sequences of amino acids.

On the other hand, music generated from , a protein that prevents cancer formation, is highly chromatic, producing particularly fascinating phrases where the music sounds almost , a style that often features fast and virtuoso technique.

TP53 protein music. , 2.12 MB

 

TP53-890x443.jpg
,
TP53, or tumor protein p53, produces chromatic music.

By guiding analysis of amino acid properties through specific music styles, protein music can sound much more pleasant to the ear. This can be further developed and applied to a wider variety of music styles, including pop and jazz.

Protein music is an example of how combining the biological and computational sciences can produce beautiful works of art. Our hope is that this work will encourage researchers to compose protein music of different styles and inspire the public to learn about the basic building blocks of life.

This study was collaboratively developed with Nicole Tay, Fanxi Liu, Chaoxin Wang and Hui Zhang.

This article is republished from under a Creative Commons license. Read the .

The Conversation

Enjoy reading ASBMB Today?

Become a member to receive the print edition four times a year and the digital edition weekly.

Learn more
Peng Zhang
Peng Zhang

Peng Zhang is a postdoctoral researcher in computational biology at the Rockefeller University.

Yuzong Chen
Yuzong Chen

Yuzong Chen is a professor of pharmacy at the National University of Singapore.

Related articles

Best of BMB 2022
Laurel Oldach
Living in a bubble
Y. Jessie Zhang & Ivaylo Ivanov
Become the protein
Laurel Oldach
More thoughts on folding and form
Maurizio Brunori & Arianna Brunori

Get the latest from ASBMB Today

Enter your email address, and we’ll send you a weekly email with recent articles, interviews and more.

Latest in Science

Science highlights or most popular articles

Transforming learning through innovation and collaboration
Award

Transforming learning through innovation and collaboration

Nov. 22, 2024

Neena Grover will receive the William C. Rose Award for Exemplary Contributions to Education at the 2025 ASBMB Annual Meeting, April 12–15 in Chicago.

Guiding grocery carts to shape healthy habits
Award

Guiding grocery carts to shape healthy habits

Nov. 21, 2024

Robert “Nate” Helsley will receive the Walter A. Shaw Young Investigator in Lipid Research Award at the 2025 ASBMB Annual Meeting, April 12–15 in Chicago.

Quantifying how proteins in microbe and host interact
Journal News

Quantifying how proteins in microbe and host interact

Nov. 20, 2024

“To develop better vaccines, we need new methods and a better understanding of the antibody responses that develop in immune individuals,” author Johan Malmström said.

Leading the charge for gender equity
Award

Leading the charge for gender equity

Nov. 19, 2024

Nicole Woitowich will receive the ASBMB Emerging Leadership Award at the 2025 ASBMB Annual meeting, April 12–15 in Chicago.

CRISPR gene editing: Moving closer to home
News

CRISPR gene editing: Moving closer to home

Nov. 17, 2024

With the first medical therapy approved, there’s a lot going on in the genome editing field, including the discovery of CRISPR-like DNA-snippers called Fanzors in an odd menagerie of eukaryotic critters.

Finding a missing piece for neurodegenerative disease research
News

Finding a missing piece for neurodegenerative disease research

Nov. 16, 2024

Ursula Jakob and a team at the University of Michigan have found that the molecule polyphosphate could be what scientists call the “mystery density” inside fibrils associated with Alzheimer’s, Parkinson’s and related conditions.